Eric Borenstein

All nextflow and nf-core pipelines have been successfully configured for use on the HPC Cluster at New York University. The configuration applies required and recommended options in order to have efficient and reliable nextflow runs. Below is the NYU HPC configuration and the latest version can always be found at Read more…

During the summer of 2020, the Ghedin and Gresham labs at New York University sequenced several SARS-CoV-2 isolates from clinical samples acquired in New York City. To visualize and share the data among researchers and collaborators we built a JBrowse web server. JBrowse is a web-based genome visualization software allowing Read more…