rnaseq – Genomics Core at NYU CGSB

Bioinformatics

Streamlined RNA-Seq Analysis Using Nextflow

UPDATED: April 16, 2024 nf-core is a community effort to collect a curated set of analysis pipelines built using Nextflow. This post will walk you through running the nf-core RNA-Seq workflow. The pipeline uses the STAR aligner by default, and quantifies data using Salmon, providing gene/transcript counts and extensive quality Read more…

By Mohammed Khalfan, 4 years2021-02-05 ago

Bioinformatics

Gene Set Enrichment Analysis in Minutes with the NASQAR Web App

Gene Set Enrichment Analysis (GSEA) is a common method to analyze RNA-Seq data that determines whether a predefined defined set of genes (for example those in a GO term or KEGG pathway) show statistically significant and concordant differences between two biological phenotypes. There are a myriad of tools for GSEA Read more…

By Mohammed Khalfan, 6 years2019-08-02 ago